ClinVar: improving access to variant interpretations and supporting evidence

نویسندگان

  • Melissa J. Landrum
  • Jennifer M. Lee
  • Mark Benson
  • Garth R. Brown
  • Chen Chao
  • Shanmuga Chitipiralla
  • Baoshan Gu
  • Jennifer Hart
  • Douglas Hoffman
  • Wonhee Jang
  • Karen Karapetyan
  • Kenneth S. Katz
  • Chunlei Liu
  • Zenith Maddipatla
  • Adriana J. Malheiro
  • Kurt McDaniel
  • Michael Ovetsky
  • George R. Riley
  • George Zhou
  • J. Bradley Holmes
  • Brandi L. Kattman
  • Donna R. Maglott
چکیده

ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) is a freely available, public archive of human genetic variants and interpretations of their significance to disease, maintained at the National Institutes of Health. Interpretations of the clinical significance of variants are submitted by clinical testing laboratories, research laboratories, expert panels and other groups. ClinVar aggregates data by variant-disease pairs, and by variant (or set of variants). Data aggregated by variant are accessible on the website, in an improved set of variant call format files and as a new comprehensive XML report. ClinVar recently started accepting submissions that are focused primarily on providing phenotypic information for individuals who have had genetic testing. Submissions may come from clinical providers providing their own interpretation of the variant ('provider interpretation') or from groups such as patient registries that primarily provide phenotypic information from patients ('phenotyping only'). ClinVar continues to make improvements to its search and retrieval functions. Several new fields are now indexed for more precise searching, and filters allow the user to narrow down a large set of search results.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

ClinVar: public archive of relationships among sequence variation and human phenotype

ClinVar (http://www.ncbi.nlm.nih.gov/clinvar/) provides a freely available archive of reports of relationships among medically important variants and phenotypes. ClinVar accessions submissions reporting human variation, interpretations of the relationship of that variation to human health and the evidence supporting each interpretation. The database is tightly coupled with dbSNP and dbVar, whic...

متن کامل

ClinVar: public archive of interpretations of clinically relevant variants

ClinVar (https://www.ncbi.nlm.nih.gov/clinvar/) at the National Center for Biotechnology Information (NCBI) is a freely available archive for interpretations of clinical significance of variants for reported conditions. The database includes germline and somatic variants of any size, type or genomic location. Interpretations are submitted by clinical testing laboratories, research laboratories,...

متن کامل

Identification of Misclassified ClinVar Variants via Disease Population Prevalence.

There is a significant interest in the standardized classification of human genetic variants. We used whole-genome sequence data from 10,495 unrelated individuals to contrast population frequency of pathogenic variants to the expected population prevalence of the disease. Analyses included the ACMG-recommended 59 gene-condition sets for incidental findings and 463 genes associated with 265 Orph...

متن کامل

ClinVar Is a Critical Resource to Advance Variant Interpretation

1. The bulk of the analysis in the Gradishar et al. study was based on ClinVar data from February 2015; however, concordance has greatly increased since then. As of May 2017, only 856/12,809 (6.7%) of BRCA1/2 variants are flagged as discordant. Additionally, in assessing discordance, the authors neglected to differentiate between ClinVar star status and interpretation differences that do or do ...

متن کامل

Rapid access to genetic discoveries underlying human disease

This month Cold Spring Harbor Molecular Case Studies unveils a new article type, Rapid Communications, for the dissemination of novel genetic variants and/or novel phenotypes in known genes discovered in patients fromgenetic and genomic sequencing.With the regular identification of novel variants in patients with rare diseases, an efficient mechanism to define the spectrum of variation and the ...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره 46  شماره 

صفحات  -

تاریخ انتشار 2018